When generalizing about all of the members of a species, you can use the definite article (the).  As in:

“There are several ways to protect the peregrine falcon.”

And:

The blue whale is the largest mammal in the world.”

Don’t use this article when talking about only some of the species.  Instead, use the plural form:

“It is imperative that we protect peregrine falcons in the United States.”

And:

Peregrine falcons that live in cities are experiencing habitat destruction.”

And:

“I saw plenty of blue whales from the deck of the boat”

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